Publications of A Zien

Zien, A.: A primer on molecular biology. In: Kernel Methods in Computational Biology, pp. 3 - 34 (Eds. Schölkopf, B.; Tsuda, K.; Vert, J.-P.). MIT Press, Cambridge, MA, USA (2004)

Franc, V.; Zien, A.; Schölkopf, B.: Support Vector Machines as Probabilistic Models. In: 28th International Conference on Machine Learning (ICML 2011), pp. 665 - 672 (Eds. Getoor, L.; Scheffer, T.). 28th International Conference on Machine Learning (ICML 2011), Bellevue, WA, USA. International Machine Learning Society, Madison, WI, USA (2011)

Ong, C.; Zien, A.: An Automated Combination of Kernels for Predicting Protein Subcellular Localization. In: Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, pp. 186 - 197 (Eds. Krandall, K.; Lagergren, J.). 8th Workshop on Algorithms in Bioinformatics (WABI 2008), Karlsruhe, Germany, September 15, 2008 - September 19, 2008. Springer, Berlin, Germany (2008)

Sonnenburg, S.; Zien, A.; Philips , P.; Rätsch, G.: POIMs: positional oligomer importance matrices: understanding support vector machine-based signal detectors. 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. Bioinformatics 24 (13), pp. i6 - i14 (2008)

Zien, A.; Brefeld, U.; Scheffer, T.: Transductive Support Vector Machines for Structured Variables. In: ICML '07: 24th International Conference on Machine Learning, pp. 1183 - 1190 (Ed. Ghahramani, Z.). 24th International Conference on Machine Learning (ICML 2007), Corvallis, OR, USA, June 20, 2007 - June 24, 2007. ACM Press, New York, NY, USA (2007)

Zien, A.; De Bona, F.; Ong, C.: Training and Approximation of a Primal Multiclass Support Vector Machine. In: XIIth International Conference on Applied Stochastic Models and Data Analysis (ASMDA 2007), 1 (Ed. Skiadas, C.). XIIth International Conference on Applied Stochastic Models and Data Analysis (ASMDA 2007), Chania, Greece, May 29, 2007 - June 01, 2007. (2007)

Zien, A.; Ong, C.: Multiclass Multiple Kernel Learning. In: ICML '07: 24th International Conference on Machine Learning, pp. 1191 - 1198 (Ed. Ghahramani, Z.). 24th International Conference on Machine Learning (ICML 2007), Corvallis, OR, USA, June 20, 2007 - June 24, 2007. ACM Press, New York, NY, USA (2007)

Sonnenburg, S.; Zien, A.; Rätsch, G.: ARTS: Accurate Recognition of Transcription Starts in Human. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil, August 06, 2006 - August 10, 2006. Bioinformatics 22 (14), H-56, pp. e472 - e480 (2006)

Chapelle, O.; Chi, M.; Zien, A.: A Continuation Method for Semi-Supervised SVMs. In: ICML '06: Proceedings of the 23rd International Conference on Machine Learning, pp. 185 - 192 (Eds. Cohen, W.; Moore, A.). 23rd International Conference on Machine Learning, Pittsburgh, PA., USA, June 25, 2006 - June 29, 2006. ACM Press, New York, NY, USA (2006)

Zien, A.; Quinonero Candela, J.: Large Margin Non-Linear Embedding. In: ICML '05: 22nd international conference on Machine learning, pp. 1065 - 1072 (Eds. Dzeroski, S.; de Raedt, L.; Wrobel, S.). 22nd International Conference on Machine Learning (ICML 2005), Bonn, Germany, August 07, 2005 - August 11, 2005. ACM Press, New York, NY, USA (2005)

Chapelle, O.; Zien, A.: Semi-Supervised Classification by Low Density Separation. In: AISTATS 2005: Tenth International Workshop onArtificial Intelligence and Statistics, pp. 57 - 64 (Eds. Cowell, R.; Ghahramani, Z.). Tenth International Workshop on Artificial Intelligence and Statistics (AI Statistics 2005), Barbados, January 06, 2005 - January 08, 2005. The Society for Artificial Intelligence and Statistics (2005)

BakIr, G.; Zien, A.; Tsuda, K.: Learning to Find Graph Pre-Images. In: Pattern Recognition: 26th DAGM Symposium, Tübingen, Germany, August 30 - September 1, 2004, pp. 253 - 261 (Eds. Rasmussen, C.; Bülthoff, H.; Schölkopf, B.; Giese, M.). 26th Annual Symposium of the German Association for Pattern Recognition (DAGM 2004), Tübingen, Germany, August 30, 2004 - September 01, 2004. Springer, Berlin, Germany (2004)

Eichhorn, J.; Tolias, A.; Zien, A.; Kuss, M.; Rasmussen, C.; Weston, J.; Logothetis, N.; Schölkopf, B.: Prediction on Spike Data Using Kernel Algorithms. In: Advances in Neural Information Processing Systems 16: Proceedings of the 2003 Conference, pp. 1367 - 1374 (Eds. Thrun, S.; Saul, L.; Schölkopf, B.). Seventeenth Annual Conference on Neural Information Processing Systems (NIPS 2003), Vancouver, BC, Canada, December 08, 2003 - December 13, 2003. MIT Press, Cambridge, MA, USA (2004)

Zien, A.; Fluck , J.; Zimmer, R.; Lengauer, T.: Microarrays: How Many Do You Need? In: RECOMB '02: Sixth Annual International Conference on Computational Biology, pp. 321 - 330 (Eds. Myers, G.; Hannenhalli , S.). Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB 2002), Washington, DC, USA, April 18, 2002 - April 21, 2002. ACM Press, New York, NY, USA (2002)

Zien, A.; Rätsch, G.; Mika, S.; Schölkopf, B.; Lemmen, C.; Smola, A.; Lengauer, T.; Müller, K.-R.: Engineering Support Vector Machine Kernels That Recognize Translation Initiation Sites. German Conference on Bioinformatics (GCB 1999), Hannover, Germany, October 04, 1999 - October 06, 1999. Bioinformatics 16 (9), pp. 799 - 807 (2000)

Zien, A.: Mathematical programming for multiple kernellearning. In 23rd European Conference on Operational Research (Euro XXIII), TD-18-1, p. 187. 23rd European Conference on Operational Research (Euro XXIII), Bonn, Germany, July 05, 2009 - July 08, 2009. (2009)

Schweikert, G.; Zeller , G.; Zien, A.; Behr, J.; Sonnenburg, S.; Philips , P.; Ong, C.; Rätsch, G.: mGene: A Novel Discriminative Gene Finder. In 2008 Topics Meeting: Worm Genomics and Systems Biology. 2008 Topics Meeting: Worm Genomics and Systems Biology, Cambridge, MA, USA, July 24, 2008 - July 25, 2008. (2008)

Schweikert, G.; Zeller, G.; Behr, J.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.; Widmer, C.: mGene: A Novel Discriminative Gene Finding System. In 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), p. 20. 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Hanisch, D.; Zien, A.; Zimmer, R.; Lengauer, T.: Co-Clustering of Biological Networks and Gene Expression Data. In Bioinformatics, (Supplement 1), p. 145S. Tenth International Conference on Intelligent Systems for Molecular Biology (ISMB 2002), Edmondon, Canada, June 29, 2002 - July 03, 2002. Oxford University Press, Oxford (2002)

Sonnenburg, S.; Zien, A.; Philips, P.; Rätsch, G.: Positional Oligomer Importance Matrices. NIPS 2007 Workshop on Machine Learning in Computational Biology (MLCB 2007), Whistler, BC, Canada (2007)